<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01//EN">
<html lang="en">
<head>
    <title>Blast search in the Registry</title>
</head>
<body>
<table border="0" cellpadding="10" cellspacing="5" style="margin-top:2px;font-size:1.6em;background-color:grey">
<tr>
            <td style="background-color:rgb( 149, 206, 145)"><a href="/part/">Parts List</a></td>
            <td style="background-color:rgb( 149, 206, 145)"><a href="/partlink/">Parts Relationships</a></td> 
            <td style="background-color:rgb( 149, 206, 145)"><a href="/pgroup/">Parts Subgroups</a></td>
            <td style="background-color:rgb( 149, 206, 145)"><a href="/help/">Methods</a></td>
            <td style="background-color:rgb( 149, 206, 145)"><a href="/blast/">Blast search</a></td>
</tr>
</table>
Submit your sequence (allow multiple sequences) to find if there are any similar (or same) sequences already in the registry.<br/>
you can use <a href="http://www-bimas.cit.nih.gov/molbio/readseq/">this tool</a> to convert sequence in other formats to Fasta format. <br/>
<form action="" method="GET">
	<label><b>Your sequence in Fasta format:</b></label><br/>
	{{form.seq}}<br/>
	Normally you can set the word size as 12 and e-value as 1. <br/>
	For short sequences (<20bp), you need to use small word size and increase the e-value cut off (as high as 10000) to find more similar sequences.<br/>
	<label><b>Set word size:</b></label>{{form.ws}}
	<label><b>Set e-value cutoff:</b></label>{{form.evalue}}<label><br/>
	<input type="submit" name="igem" value="Search">
</form>
{% if res %}
<table cellspacing="5" border="1">
<thead>
	<tr><th>Query</th><th>Part</th><th>Part length</th><th>E-value</th><th>Identities</th><th>Query start</th>
		<th>Part start</th><th>Query end</th><th>Part end</th></tr>
</thead>
<tbody>
        {% for record in res %}
        <tr>
          {% for i in record %}
	  <td>{{i}}</td>
          {% endfor %}
        </tr>
        {% endfor %}
</tbody>
</table>
{% endif %}
</body>
</html>
